Master Computational Systems

PRACTICES/MASTER THESIS OFFER 2023 - 2024

Centro de Biotecnología y Genómica de Plantas
ID	Título	Tutor/es	Requisitos	Nº Plazas	Horas semanales	Horario	ESTADO
CBGP1	Engineering library of plant hormone biosensors for plant synthetic biology applications	Krzysztof Wabnik	Training in Biotechnology or Bioengineering, good command of English, previous lab experience is desirable, familiarity with molecular biology techniques, previous experience with Phyton, R, Image analysis computational modeling tools is a plus	1	25	9:30-14:30	CERRADA
CBGP2	Discovery and characterization of genomic fragments from wild species in the tomato genome	José M Jiménez-Gómez	Experience with programming in R and Bash is mandatory. Familiarity with Phyton OR Perl is necessary. Good command of English is advisable.	2	20	Flexible	CERRADA
CBGP3	Comparative epigenomic analyses in plants	Pedro Crevillén Lomas	Student in the Grade of Biochemistry, Biotechnology or Computational Engineering Science with a strong interest in computational biology analyses of genomic data. Experience regarding ChIP-seq or RNA-seq data analysys and knowledge of R or Python are desirable.	1	25	Flexible	CERRADA
Consejo Superior de Investigaciones Científicas
ID	Título	Tutor/es	Requisitos	Nº Plazas	Horas semanales	Horario	ESTADO
CIBCSIC1	Artificial intelligence-based approaches to understand replication protein interactions and function	Rodrigo Bermejo Moreno	It is recommended to complete the subjects of machine learning, and knowledge representation and acquisition. Knowledge of English language and basic protein biology is recommended.	1	20	Flexible	CERRADA
CSIC2	Chemical control of the pathway leading to salt tolerance in plants	Armando Albert de la Cruz	Student in the Grade of Biotechnology, Biochemistry or Bioengineering.	1	20	Flexible	CERRADA
Centro Nacional de Biotecnología
ID	Título	Tutor/es	Requisitos	Nº Plazas	Horas semanales	Horario	ESTADO
CNB1	Identification of a citronellal biosynthetic pathway from Lemon eucalyptus comparative metabolomic and transcriptomic analyses	Eduardo González Grandío	Student in Biosciences Grade (Biotechnology, Biology, etc.). Previous bioinformatic skills and knowledge of languages would be an asset.	1	20-35h	Adaptable between 9:00 and 19:00	CERRADA
Centro de Tecnología Biomédica
ID	Título	Tutor/es	Requisitos	Nº Plazas	Horas semanales	Horario	ESTADO
CTB1	Modelling gene-disease annotations using public gene expression datasets.	Lucía Prieto Santamaría	Computational Biology Master student. Experience working with programmatic access to biomedical databases is a plus.	1	25-30	To be agreed with the student	CERRADA
CTB2	Exploring Gene-Disease Associations through the use of Large Language Models	Paloma Tejera Nevado	Complete requirements within the PDF	1			CERRADA
CTB3	Utilizing Deep Learning Models for Protein Folding Prediction: An Exploration of Explainability, Biases, Ethics, and Trustworthiness	Paloma Tejera Nevado	Complete requirements within the PDF	1	20	Flexible	CERRADA
ETS de Ingeniería Agronómica, Alimentaria y de Biosistemas
ID	Título	Tutor/es	Requisitos	Nº Plazas	Horas semanales	Horario	ESTADO
ETSIAB1	Species traits quantitative estimation through phylogenetic information	José Ángel Capitán Gómez	Enrolled in the MSc on Computational Biology. Programming skills in R or python, eager to become proficient on them at the end of the internship. Background in statistics and machine learning. Interest on pursuing a research career will be a plus.	1	25	Flexible, between 10:00 to 17:00	CERRADA
ETSIAB2	Strategies to survive stress: Analysis of Transposable Element expression after heat and nutrient deficiency in Arabidopsis plants	Elena Caro Bernat	Student in the Computational Biology Master	1	5-10	A convenir	CERRADA
ETSI Telecomunicación UPM
ID	Título	Tutor/es	Requisitos	Nº Plazas	Horas semanales	Horario	ESTADO
ETSIT1	Estudio de la relación de datos clínicos y de características en imágenes histopatológicas H&E y paneles genómicos de riesgo en cáncer de mama	María Jesús Ledesma Carbayo	Estudiante de Grado de Biotecnología/Especialidad Computacional o el Máster de Biología Computacional.	1	35	9:00-14:00	CERRADA
ETSIT2	Estudio de las características estromales del cáncer de pulmón no microcítico en una muestra amplia de imágenes histopatológicas multitinción	María Jesús Ledesma Carbayo	Estudiante de Grado de Biotecnología/Especialidad Computacional o el Máster de Biología Computacional.	1	35	9:00-14:00	CERRADA
HI IBERIA
ID	Título	Tutor/es	Requisitos	Nº Plazas	Horas semanales	Horario	ESTADO
HIIBERIA1	8ai :: Proyectos de Inteligencia Artificial aplicados a la Industria	Roberto G.E. Martín	Complete requirements within the PDF	2	25-30	8:00-14:00	CERRADA
Instituto de Salud Carlos III
ID	Título	Tutor/es	Requisitos	Nº Plazas	Horas semanales	Horario	ESTADO
ISC1	Predicción de virulencia en bacterias intrahospitalarias resistentes a antibióticos mediante "machine learning".	Antonio Javier Martín Galiano	- Grado en biología, química, farmacia, biotecnología o similar. - Conocimientos de microbiología molecular y genómica. - Programación en lenguaje python bajo sistema operativo Linux. - Capacidad para realizar aproximaciones de "Machine learning".	1	20	9:30-13:30	CERRADA
San Pablo CEU University
ID	Título	Tutor/es	Requisitos	Nº Plazas	Horas semanales	Horario	ESTADO
CEU1	Single cell omic data analysis in allergic disease	Osvaldo Grana Castro	Student in the Bioinformatics Masters’ degree Recommendable previous experience with R coding Basic background in statistical analysis	1	25	Lunes a viernes	CERRADA
University of Cologne
ID	Título	Tutor/es	Requisitos	Nº Plazas	Horas semanales	Horario	ESTADO
UC1	Regulation of fungal effector gene expression across diverse soils	Prof. Bart Thomma/ Dr Fantin Mesny	• Proven proficiency in programming (e.g., Python and/or R) and familiarity with UNIX command lines • Basic knowledge on microbiology and/or microbial ecology • Basic knowledge of transcriptomics	1	Flexible	Flexible	CERRADA
UC2	Metagenomic analysis of barley root-associated microbiomes and elucidation of regulatory networks involved in root-microbe interactions.	Prof. Alga Zuccaro (UoC)	• Proven proficiency in programming (e.g., Python/Perl and/or R) as well as command line. • Genuine interest in plant microbe interactions and microbiome studies is advantageous. • The student is expected to be fluent in English.	1	Flexible	Flexible	CERRADA
Universidad Complutense de Madrid
ID	Título	Tutor/es	Requisitos	Nº Plazas	Horas semanales	Horario	ESTADO
UCM1	Computational tool for monitoring cell nucleus activity.	Francisco Monroy Muñoz	Grado en Ciencias o Ingeniería, Orientación biofísica y/o biología computacional. Informática: Conocimientos de programación en MATLAB y/o MATHEMATICA / PYTHON	1			CERRADA
UCM2	Biophysics / bioinformatics for the metabolic regulatory network of the human red blood cell	Francisco Monroy Muñoz	Grado en Ciencias o Ingeniería, Orientación bioinformática, biofísica y/o biología computacional. Informática: Conocimientos de programación en MATLAB y/o MATHEMATICA	1			CERRADA
UCM3	Analysis of the genomic diversity of yeasts of the Metschnikowia clade	Sergio Álvarez Pérez	Students of the Master Program on Computational Biology. Previous knowledge on bash/R/Python programming. Proficiency in English. Interest in pursuing a career in research will be considered a plus.	1-2	To be agreed with the students	To be agreed with the students (possibility of remote work)	CERRADA
UCM4	Estudio de dominios neurocognitivos en enfermedad de Alzheimer mediante redes bayesianas y teoría de grafos / Study of neurocognitive domains in Alzheimer's disease using Bayesian networks and graph theory	José Luis Ayala Rodrigo	Complete requirements within the PDF	1	15	9:00-12:00, o 15:00-18:00	CERRADA
UCM5	Modelado mediante técnicas de aprendizaje automático y aprendizaje profundo para la predicción temprana de riesgo de fibrilación auricular / Modeling using machine learning and deep learning techniques for early prediction of atrial fibrillation risk	José Luis Ayala Rodrigo	Complete requirements within the PDF	1	15	9:00-12:00, o 15:00-18:00	CERRADA
UCM6	Computational Model-Data Integration in Physical Cell Biology / Computational Cell Biophysics	Francisco Monroy Muñoz	Grado en Ciencias o Ingeniería, Orientación biofísica y/o biología computacional. Informática: Conocimientos de programación en MATLAB y/o MATHEMATICA	1			CERRADA